External Email - Use Caution Dear team,
I am running mri_gtmpvc using RBV correction, however when I do so I get an error message saying it cannot find $SUBJECTS_DIR/$subject_id/mri/orig.mgz needed for RBV. Our Freesurfer outputs are nested as $subject_id/MPRAGE/Freesurfer/mri/orig.mgz. I tried mri_gtmpvc with "--sd" flag as well, still same error as when I set "--sd $subject_id/MPRAGE/Freesurfer" it tries to find the file as $subject_id/MPRAGE/Freesurfer/$subject_id/mri/orig.mgz. One way I can avoid doing this is by creating a soft link with the expected path, however if there is a better way to do so that would be great. Thank you, Sneha
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.