Hi Stefanie
The registration is based on the curvature of the smoothwm surface (among other
things) so not easily. Lilla might know more about that atlas.
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Stefanie Bradley
Sent: Monday, March 31, 2025 4:35 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mris_register external atlas
External Email - Use Caution
Hi there,
I am trying to register my Freesurfer subject's cortical surface into a common
space to use the parcellations from a pediatric atlas (UNC 4D cortical surface
atlas).
With Freesurfer version 8.0.0 in a Linus OS, I am using mris_register as:
mris_register -1 individual_subject/lh.sphere 4D_atlas/lh.sphere
individual_subject /lh.sphere.FS.reg.
I am getting an error where it says it requires a smoothwm file from the atlas
files, though I only have curvature and sphere files from the atlas. Is there a
way to register the atlas files to my subjects and then put the parcellations
onto my subject's cortical surface?
Thanks,
Stefanie
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