External Email - Use Caution Hi Freesurfer Community,
The NextBrain page showcases the results of the pipeline on the Edlow brain binned at 200um, but we weren't able to reproduce this on our data with a voxel size < 300 um (thus we binned the data). With my colleague Andrew, we've pinpointed the issue to the cartoon fitting step. On what system was the NextBrain run at this resolution? I assume it was run on CPU only? Did you have to tweak the cartoon or other key steps to make it run? Best regards, Dr Matthieu Chourrout [orcid logo 16px] <https://secure-web.cisco.com/1tiMIHDVZbi1_soxzRzk-v66TQ9fs4j0sOPE5nQKOghqmPCbTrhwSaTPfpnxSdARQKbAEQje-REikDuSM16D6HxBsA1I5iTrncEToD4dYzCbGaQ1h6sLrEAe2JH5qGXVFRPTt0Rsrd0GzjSq6OeKZFbx1Mnk6uDnWSQceO2u4Y3nzsoHJGXDVR_swYlewjBAXZ4LRIyQc_MaYR-15E4BOUxHNvWNsKdpWwEz8n4jrstyvGF9vsHwoey9gJql5IQ01-m7GqtoeE4wuXQW--2-akFIN9h3wUzXjOWMfFADRIcAINOllz5_uhx7DsoUGFlk_MFu0D1ooJA8gDP7YHT95V93iNVoq3S0dWOyfyaagjyI/https%3A%2F%2Forcid.org%2F0000-0002-2282-6976> Research Fellow on Correlative X-ray Imaging for the Large-scale Imaging of Neural Circuits UCL Mechanical Engineering<https://secure-web.cisco.com/1YgMFScJszy12Gw3eD79ViRNN_Bv5QtTSAxq4Qz7GI7Knh44NLn-kDVVJtKyR7LK94sUplJVxh1lATYUSrER2UAcbZ0P0dDmoQMbwg5HdIOi4c1rnTYKHXSrXmxXbtC3oGEg9jw1AwemQrurolqsKoKPYpgXsO57-c-Rb8bMURDIT1jc5_7tnHNKMjD-8sf5suZ2a9myXU6r4QMFvveB6AfDHk03FbkE8ydQ4n0MPWr-KvWmAs5TmkdjA8Gazo4JkjhAt7o-uAjxDCab7TokSnG95D1CzXwj1w3uhK1b0PJkRpTSQzFyVU15toNEJF3JqWo_ckl9wYaGEMc_0qDkfe6FJVL8O-RsVesFFdr-rDXs/https%3A%2F%2Fwww.ucl.ac.uk%2Fmechanical-engineering%2F> Materials, Structure and Manufacturing at Harwell (MSMaH)<https://secure-web.cisco.com/1H0MGshh9I-h03eOLwUTo_X7Tm443MK0cYSkOlls2X_MeopzveOAqsWX5xBr37o3lWkFMuxn2eiGAGQGx9JISHo0ZprbvdwT0_29qLh6zDR_1pGEmZoilHB3stgNM6bMKW5LxZEZ9DxvjrnuE6kz-KPd-_PZp1wRTKmnbYmwNGKyU8q6jLnldVOTcyNi_XiEVmT3TlrUPXPQ5BZ0SW1Yvs1-p9noLPeXCquCSUp1OlGD7btArSHpw5CPIER5vL0G7z87dUjSMOiC-poyWRJFCDWtViSeheMf_Z_suIADs2jDkvfdsXAzGv3oJtXU1D2Mh3uK8CKx9ddaS7ZgH7JMYElmTpGVqHP_2gRYhDvLi6q4/https%3A%2F%2Fwww.ucl.ac.uk%2Fmaterials-harwell%2Fmaterials-structure-and-manufacturing-harwell-activity%23%3A%7E%3Atext%3DLed%2520by%2520Professor%2520Peter%2520Lee,group%20with%20over%2030%20members.> Rm 4.17 Malet Place Eng. Building, Torrington Place, London, WC1E 7JE Bloomsbury Campus, University College London
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
