Have you tried using mri_segstats, eg,
mri_segstats --seg cerebellum_17_network_${mask_option}_mask.nii.gz
--sum cerebellum_17_network_${mask_option}_mask.stats
On 5/8/2025 4:15 AM, Payam Sadeghi Shabestari wrote:
External Email - Use Caution
Hi FS team,
I'm trying to obtain anatomical statistics for the regions defined in
the Choi 2012 and Buckner 2011 parcellations,but I couldn't figure out
how to get stats on them. I already did:
for mask_option in "${mask_options[@]}"; do
mri_vol2vol --mov $SUBJECTS_DIR/$subject_id/mri/norm.mgz \
--s $subject_id \
--targ
$SUBJECTS_DIR/MNI152/buckner_atlas/17_network_${mask_option}_mask.nii.gz \
--m3z $SUBJECTS_DIR/MNI152/mri/transforms/talairach.m3z \
--noDefM3zPath \
--o
$SUBJECTS_DIR/$subject_id/mri/cerebellum_17_network_${mask_option}_mask.nii.gz
\
--inv-morph \
--interp nearest
Thank you and best regards,
Payam
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