Hi Mohamed, Have you try to remove (and backup if you want) the whole .venn folder? Galaxy will create a new one with all its needs.
Best Gildas ----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr <http://abims.sb-roscoff.fr/> Member of the Workflow4Metabolomics project http://workflow4metabolomics.org <http://workflow4metabolomics.org/> Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------ > Le 24 févr. 2017 à 09:42, Mohamed Kassam <k.mam...@gmail.com> a écrit : > > Hello > i tried to install via root and maybe it works, > > However now the bash run.sh it is working, however my ldap is not working I > have password incorrect and I get this error in the terminal : > > galaxy.auth.providers.ldap_ad ERROR 2017-02-24 10:52:24,672 LDAP > authenticate: search exception > Traceback (most recent call last): > File "/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py", line > 118, in authenticate > ldap.set_option(*opt) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py", > line 135, in set_option > return _ldap_function_call(None,_ldap.set_option,option,invalue) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py", > line 66, in _ldap_function_call > result = func(*args,**kwargs) > ValueError: option error > > > Any idea ? > > Thanks, > > Mohamed > > 2017-02-24 9:11 GMT+01:00 Mohamed Kassam <k.mam...@gmail.com > <mailto:k.mam...@gmail.com>>: > Dear all, > > I have migrate my old version of Galaxy to the new release V17.01, And I am > facing this error when I am running run.sh, any clue ? > > Installing collected packages: python-ldap > Found existing installation: python-ldap 2.4.17 > DEPRECATION: Uninstalling a distutils installed project (python-ldap) has > been deprecated and will be removed in a future version. This is due to the > fact that uninstalling a distutils project will only partially uninstall the > project. > Can't uninstall 'python-ldap'. No files were found to uninstall. > Can't roll back python-ldap; was not uninstalled > Exception: > Traceback (most recent call last): > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/basecommand.py", > line 215, in main > status = self.run(options, args) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/commands/install.py", > line 342, in run > prefix=options.prefix_path, > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_set.py", > line 784, in install > **kwargs > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py", > line 851, in install > self.move_wheel_files(self.source_dir, root=root, prefix=prefix) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py", > line 1064, in move_wheel_files > isolated=self.isolated, > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py", > line 345, in move_wheel_files > clobber(source, lib_dir, True) > File > "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py", > line 329, in clobber > os.utime(destfile, (st.st_atime, st.st_mtime)) > OSError: [Errno 1] Operation not permitted: > '/home/galaxy/galaxy-dist/.venv/lib64/python2.7/site-packages/dsml.pyo' > > > Thanks, > > Mohamed > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/
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