Dear Gildas,
Thanks for your message.
So I 've tried and it recretaed a new .venv. I've checked the ldap python
and it was succeffully installed : Installing collected packages: psycopg2,
Pygments, WebError, python-ldap
Successfully installed Pygments-2.0.2 WebError-0.10.3 psycopg2-2.6.1
python-ldap-2.4.27
Activating virtualenv at .venv
But the probelm is still there, and I think it is because there is this new
folder auth in galaxy-dist/lib/galaxy/auth/.
And maybe it is looking from that
File "/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py", line
118, in authenticate
ldap.set_option(*opt)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 135, in set_option
return _ldap_function_call(None,_ldap.set_option,option,invalue)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 66, in _ldap_function_call
result = func(*args,**kwargs)
ValueError: option error
Any one has this error ?
Mohamed
2017-02-24 9:47 GMT+01:00 Gildas Le Corguillé <lecorgui...@sb-roscoff.fr>:
> Hi Mohamed,
>
> Have you try to remove (and backup if you want) the whole .venn folder?
> Galaxy will create a new one with all its needs.
>
> Best
>
> Gildas
>
> -----------------------------------------------------------------
> Gildas Le Corguillé - Bioinformatician/Bioanalyste
>
> Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
> http://abims.sb-roscoff.fr
>
> Member of the Workflow4Metabolomics project
> http://workflow4metabolomics.org
>
> Station Biologique de Roscoff - UPMC/CNRS - FR2424
> Place Georges Teissier 29680 Roscoff FRANCE
> tel: +33 2 98 29 23 81 <02%2098%2029%2023%2081>
> ------------------------------------------------------------------
>
>
>
> Le 24 févr. 2017 à 09:42, Mohamed Kassam <k.mam...@gmail.com> a écrit :
>
> Hello
> i tried to install via root and maybe it works,
>
> However now the bash run.sh it is working, however my ldap is not working
> I have password incorrect and I get this error in the terminal :
>
> galaxy.auth.providers.ldap_ad ERROR 2017-02-24 10:52:24,672 LDAP
> authenticate: search exception
> Traceback (most recent call last):
> File "/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py",
> line 118, in authenticate
> ldap.set_option(*opt)
> File
> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
> line 135, in set_option
> return _ldap_function_call(None,_ldap.set_option,option,invalue)
> File
> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
> line 66, in _ldap_function_call
> result = func(*args,**kwargs)
> ValueError: option error
>
>
> Any idea ?
>
> Thanks,
>
> Mohamed
>
> 2017-02-24 9:11 GMT+01:00 Mohamed Kassam <k.mam...@gmail.com>:
>
>> Dear all,
>>
>> I have migrate my old version of Galaxy to the new release V17.01, And I
>> am facing this error when I am running run.sh, any clue ?
>>
>> Installing collected packages: python-ldap
>> Found existing installation: python-ldap 2.4.17
>> DEPRECATION: Uninstalling a distutils installed project (python-ldap)
>> has been deprecated and will be removed in a future version. This is due to
>> the fact that uninstalling a distutils project will only partially
>> uninstall the project.
>> Can't uninstall 'python-ldap'. No files were found to uninstall.
>> Can't roll back python-ldap; was not uninstalled
>> Exception:
>> Traceback (most recent call last):
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/basecommand.py",
>> line 215, in main
>> status = self.run(options, args)
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/commands/install.py",
>> line 342, in run
>> prefix=options.prefix_path,
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_set.py",
>> line 784, in install
>> **kwargs
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py",
>> line 851, in install
>> self.move_wheel_files(self.source_dir, root=root, prefix=prefix)
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py",
>> line 1064, in move_wheel_files
>> isolated=self.isolated,
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py",
>> line 345, in move_wheel_files
>> clobber(source, lib_dir, True)
>> File
>> "/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py",
>> line 329, in clobber
>> os.utime(destfile, (st.st_atime, st.st_mtime))
>> OSError: [Errno 1] Operation not permitted: '/home/galaxy/galaxy-dist/.ven
>> v/lib64/python2.7/site-packages/dsml.pyo'
>>
>>
>> Thanks,
>>
>> Mohamed
>>
>
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