Dear Gildas,
Thanks for your message.
So I 've tried and it recretaed a new .venv. I've checked the ldap
python and it was succeffully installed : Installing collected
packages: psycopg2, Pygments, WebError, python-ldap
Successfully installed Pygments-2.0.2 WebError-0.10.3 psycopg2-2.6.1
python-ldap-2.4.27
Activating virtualenv at .venv
But the probelm is still there, and I think it is because there is
this new folder auth in galaxy-dist/lib/galaxy/auth/.
And maybe it is looking from that
File "/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py",
line 118, in authenticate
ldap.set_option(*opt)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 135, in set_option
return _ldap_function_call(None,_ldap.set_option,option,invalue)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 66, in _ldap_function_call
result = func(*args,**kwargs)
ValueError: option error
Any one has this error ?
Mohamed
2017-02-24 9:47 GMT+01:00 Gildas Le Corguillé
<lecorgui...@sb-roscoff.fr <mailto:lecorgui...@sb-roscoff.fr>>:
Hi Mohamed,
Have you try to remove (and backup if you want) the whole .venn
folder?
Galaxy will create a new one with all its needs.
Best
Gildas
-----------------------------------------------------------------
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
http://abims.sb-roscoff.fr
Member of the Workflow4Metabolomics project
http://workflow4metabolomics.org <http://workflow4metabolomics.org/>
Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81 <tel:02%2098%2029%2023%2081>
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Le 24 févr. 2017 à 09:42, Mohamed Kassam <k.mam...@gmail.com
<mailto:k.mam...@gmail.com>> a écrit :
Hello
i tried to install via root and maybe it works,
However now the bash run.sh it is working, however my ldap is not
working I have password incorrect and I get this error in the
terminal :
galaxy.auth.providers.ldap_ad ERROR 2017-02-24 10:52:24,672 LDAP
authenticate: search exception
Traceback (most recent call last):
File
"/home/galaxy/galaxy-dist/lib/galaxy/auth/providers/ldap_ad.py",
line 118, in authenticate
ldap.set_option(*opt)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 135, in set_option
return _ldap_function_call(None,_ldap.set_option,option,invalue)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 66, in _ldap_function_call
result = func(*args,**kwargs)
ValueError: option error
Any idea ?
Thanks,
Mohamed
2017-02-24 9:11 GMT+01:00 Mohamed Kassam <k.mam...@gmail.com
<mailto:k.mam...@gmail.com>>:
Dear all,
I have migrate my old version of Galaxy to the new release
V17.01, And I am facing this error when I am running run.sh,
any clue ?
Installing collected packages: python-ldap
Found existing installation: python-ldap 2.4.17
DEPRECATION: Uninstalling a distutils installed project
(python-ldap) has been deprecated and will be removed in a
future version. This is due to the fact that uninstalling a
distutils project will only partially uninstall the project.
Can't uninstall 'python-ldap'. No files were found to
uninstall.
Can't roll back python-ldap; was not uninstalled
Exception:
Traceback (most recent call last):
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/basecommand.py",
line 215, in main
status = self.run(options, args)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/commands/install.py",
line 342, in run
prefix=options.prefix_path,
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_set.py",
line 784, in install
**kwargs
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py",
line 851, in install
self.move_wheel_files(self.source_dir, root=root, prefix=prefix)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/req/req_install.py",
line 1064, in move_wheel_files
isolated=self.isolated,
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py",
line 345, in move_wheel_files
clobber(source, lib_dir, True)
File
"/home/galaxy/galaxy-dist/.venv/lib/python2.7/site-packages/pip/wheel.py",
line 329, in clobber
os.utime(destfile, (st.st_atime, st.st_mtime))
OSError: [Errno 1] Operation not permitted:
'/home/galaxy/galaxy-dist/.venv/lib64/python2.7/site-packages/dsml.pyo'
Thanks,
Mohamed
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