Good Afternoon Archie: If I take 300 bases of sequence around this location from hg18 and blat it to hg19, I get two potential answers:
chr17:36453042-36453341 chr17:45569633-45569933 I'm guessing the liftOver process could not decide where the sequence got off to since it appears to be in two locations. --Hiram Archie Russell wrote: > Hi guys, > > I'm looking at this region > > chr17:33706711-33706711 (there's a SNP there) on hg18 > > I plugged this into liftOver; it can't be mapped: > > #Deleted in new > > chr17:33706711-33706711 > > > But the SNP in that region is in both builds (in hg19 it has two locations), > as is the gene. Do you guys know why liftOver doesn't work for this base? > > Thanks, > Archie > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
