Thanks Hiram Could you log this as an ehancement request if you have such a capability? In this case I can pin a pretty good location down by hand (using MRPL45 and the snp alignments).
Archie On Thu, Feb 11, 2010 at 3:23 PM, Hiram Clawson <[email protected]> wrote: > Good Afternoon Archie: > > If I take 300 bases of sequence around this location from hg18 > and blat it to hg19, I get two potential answers: > > chr17:36453042-36453341 > chr17:45569633-45569933 > > I'm guessing the liftOver process could not decide where the > sequence got off to since it appears to be in two locations. > > --Hiram > > Archie Russell wrote: > >> Hi guys, >> >> I'm looking at this region >> >> chr17:33706711-33706711 (there's a SNP there) on hg18 >> >> I plugged this into liftOver; it can't be mapped: >> >> #Deleted in new >> >> chr17:33706711-33706711 >> >> >> But the SNP in that region is in both builds (in hg19 it has two >> locations), >> as is the gene. Do you guys know why liftOver doesn't work for this >> base? >> >> Thanks, >> Archie >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
