Hi, there: This is Lei. I have problem with "intersection" function in "table browser". We have a custom track containing genome wide ChIP-Chip peak data in BED format (mm8) and we try to find out which genes those peaks intersect. Then we intersect our custom track with Knowgene table on Knowgene track (mm8) and we found some genes with peaks are missing in the gene list. The next thing we did is to liftover our BED format to mm9, and redo the intersection. These genes still cannot be recognized after intersection. We also tried to intersect our custom track with RefSeq table, and had the same problem. Do we miss some tricks during the procesee? If you could provide us a detailed manual of how to use table browser, it will be a great help. UCSC genome browser is something I cannot live without. THX for your work. It's really cool. Look forward to your reply. Sincerely,
Lei Ying, MD, Ph.D Postdoctoral Fellow Department of Hematology The Children's Hospital of Philadelphia Philadelphia, PA, 19104 _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
