The fifth column is a percent number represented as an integer percent times 10.
Divide column 5 by 10 to get a percentage. Your example is: %42 %37 %41 %41 %40 --Hiram Yiwen Chen wrote: > Hi, > > I was using hgGcPercent to calculate GC content in windows. > However, my output contains the GC #(last column) that is larger than > window-size 100. I was wondering whether the # in the last column > does represent the GC # in the window(see following). > The command line i used was > hgGcPercent -doGaps -win=100 -file=filename -noLo > ad -verbose=0 database directory > > > chr2L 0 100 GC 420 > chr2L 100 200 GC 370 > chr2L 200 300 GC 410 > chr2L 300 400 GC 410 > chr2L 400 500 GC 400 > > Thank you very much. > > Best, > Yiwen Chen _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
