Hiram, Thank you very much.
--Yiwen On Thu, Sep 16, 2010 at 1:35 PM, Hiram Clawson <[email protected]> wrote: > The fifth column is a percent number represented > as an integer percent times 10. > > Divide column 5 by 10 to get a percentage. > Your example is: %42 %37 %41 %41 %40 > > --Hiram > > > Yiwen Chen wrote: > >> Hi, >> >> I was using hgGcPercent to calculate GC content in windows. >> However, my output contains the GC #(last column) that is larger than >> window-size 100. I was wondering whether the # in the last column >> does represent the GC # in the window(see following). >> The command line i used was >> hgGcPercent -doGaps -win=100 -file=filename -noLo >> ad -verbose=0 database directory >> >> >> chr2L 0 100 GC 420 >> chr2L 100 200 GC 370 >> chr2L 200 300 GC 410 >> chr2L 300 400 GC 410 >> chr2L 400 500 GC 400 >> >> Thank you very much. >> >> Best, >> Yiwen Chen >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
