Hi my name is Eden Kleiman. I am a post-doc at the University of Miami.
Recently, our lab performed transcriptome analysis on B cell subsets. I have
been using your software for various analysis. The output format for the
transcriptome data gives me a chromosomal coordinate range for every comparison
between two B cell subsets (no absolute value just relative expression levels
of each gene between two B cell subset). In the attached example, B cell
subsets S1 (column D) and S2 (column E) are being compared for their expression
of a certain gene. The gene coordinates are given in column C. I have no
problem plugging this range into genome browser and finding out which gene is
listed.
But my problem is that I have over 100,000 rows that need gene names. I would
like to know if there is a way to do this on a larger scale where I could
submit many chromosomal coordinates and receive the gene names instantly? My
other question is that if this is possible, what will Genome Browser do about
getting multiple gene names for each chromosomal range?
Thank you,
Eden
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