Dear Colleagues, I have two questions about human chained self alignments (hg19).
1. Axt files and hg19.hg19.all.chain.gz, which can be download from the following address, do not seem to include many of chained self alignments shown in the genome brower. Please see chr17:37990980-37992472 and chr8:83871562-83873067 - 108685 in axt files for example. Why? http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsSelf/ 2. Where can I download all the self-chain alignment information (positions and the aligned sequences) shown in the genome browser? Thank you ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ Daisuke Komura Department of Pathology, Graduate School of Medicine, The University of Tokyo. 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033 Japan mailto: [email protected] ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
