Hi Greg, Your suggestion of adding the search type parameter was perfect.
Thank you, Jake On Mon, May 9, 2011 at 12:38 PM, Greg Roe <[email protected]> wrote: > Hi Jake, > > I believe you just need to specify the search type in your URL (e.g. > type=DNA). It should then work. > > Please see this previous mailing list question for extra details: > https://lists.soe.ucsc.edu/pipermail/genome/2006-June/011020.html > > - Greg > > > > On 5/6/11 8:28 PM, jake lin wrote: > >> Hi, >> >> The lab I am supporting would like to link our web content repository to >> UCSC BLAT or NCBI BLAST web functions. It is an internal web so the usage >> will be quite light, couple times a day at most, looking up oligo sequence >> by creating these oligo sequences into html links, setting the query >> parameter. >> >> Our preference is to use BLAT, so much faster and the nicety of getting >> the >> results on the genome browser. Also the insillico PCR function. >> >> As the BLAT web ui loads, I see that I can construct the organism, and sub >> db preference within the url/browser links: >> ie loading C. elegans and db ce4 >> http://genome.ucsc.edu/cgi-bin/hgBlat?org=C.%20elegans&db=ce4 >> >> But when I try passing in a sequence, looks to be userSeq >> >> http://genome.ucsc.edu/cgi-bin/hgBlat?command=start&org=C.%20elegans&db=ce4&userSeq=AATTAATTAATTAATTAATT >> >> Here is the output from webpage: >> >> Sorry, didn't find input variable type Probably the web page didn't mean >> to >> call this program. >> Am I doing something silly? >> Looks like the insillico PCR allows passing in sequence, as does the >> BLAST. >> >> Thanks, >> Jake >> >> -- jl _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
