Here is my test.fa >probe_set:HuEx-1_0-st-v2:2315101; Assembly=build-34/hg16; Seqname=chr1; >Start=1788; Stop=2030; Strand=+; TGTCTCTTAGCCCAGACTTCCCGTGTCCTTTCCACCGGGCCTTTGAGAGGTCACAGGGTC TTGATGCTGTGGTCTTCATCTGCAGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAG GGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGG ATGGGCCATTGTTCATCTTCTGGCCCCTGTTGTCTGCATGTAACTTAATACCACAACCAG GCA
On Mon, Jun 13, 2011 at 6:29 PM, Hiram Clawson <[email protected]> wrote: > Can you say anything about your query sequence in test.fa ? > > ----- Original Message ----- > From: "Jinyan Huang" <[email protected]> > To: [email protected] > Sent: Monday, June 13, 2011 6:17:18 AM > Subject: [Genome] Blat problem > > Dear list, > > When I run blat local. I always get this error. > >>blat ~/bin/blat/hg19.2bit test.fa test.psl > > Loaded 3137161264 letters in 93 sequences > needHugeMen: Out of huge memory - request size 962165992 bytes > > In fact, my machine have 48G memory. I have set: > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
