thanks luvina, just to make sure: Is the enseGene track information should also refer to the enseGene of corresponding build in the Table browser ?
Thanks, Assaf On Fri, Jul 8, 2011 at 8:42 PM, Luvina Guruvadoo <[email protected]>wrote: > Hi Assaf, > > You can find this information by viewing the Ensembl track description page > for each assembly. Using squirrel as an example, see > http://genome-test.cse.ucsc.**edu/cgi-bin/hgTrackUi?&db=** > speTri1&g=ensGene<http://genome-test.cse.ucsc.edu/cgi-bin/hgTrackUi?&db=speTri1&g=ensGene> > . > > Please contact us again at [email protected] if you have further > questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > > On 7/8/2011 7:29 AM, asas asasa wrote: > >> Hello all, >> >> I'm preparing a local mysql database with different UCSC tables, >> including >> ensGene/pep/gtp downloaded from the Table Browser. If I understand >> correctly >> these ensembl tables correspond to the last ensembl version published in >> the >> release notes here: >> http://genome.ucsc.edu/**goldenPath/releaseLog.html<http://genome.ucsc.edu/goldenPath/releaseLog.html>(it >> is >> now version 62 in most cases)... >> I also want to add those genomes that are absent in the formal site (e.g. >> Squirrel, Pika, Tree shrew, etc....), and found in >> http://genome-test.cse.ucsc.**edu <http://genome-test.cse.ucsc.edu>. >> Ensembl table for these genomes can be >> downloaded from the Table Browser in the test site: >> http://genome-test.cse.ucsc.**edu/ <http://genome-test.cse.ucsc.edu/>, >> but which ensembl version do they >> correspond to ? >> >> Best wishes, >> Assaf >> ______________________________**_________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/**mailman/listinfo/genome<https://lists.soe.ucsc.edu/mailman/listinfo/genome> >> >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
