Hi Asaf, This is correct; the Ensembl gene track information corresponds to the ensGene build in the Table Browser.
Regards, --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 7/8/2011 11:00 AM, asas asasa wrote: > thanks luvina, > > just to make sure: > Is the enseGene track information should also refer to the enseGene of > corresponding build in the Table browser ? > > Thanks, > Assaf > > On Fri, Jul 8, 2011 at 8:42 PM, Luvina Guruvadoo <[email protected] > <mailto:[email protected]>> wrote: > > Hi Assaf, > > You can find this information by viewing the Ensembl track > description page for each assembly. Using squirrel as an example, see > http://genome-test.cse.ucsc.edu/cgi-bin/hgTrackUi?&db=speTri1&g=ensGene > <http://genome-test.cse.ucsc.edu/cgi-bin/hgTrackUi?&db=speTri1&g=ensGene>. > > Please contact us again at [email protected] > <mailto:[email protected]> if you have further questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > > On 7/8/2011 7:29 AM, asas asasa wrote: > > Hello all, > > I'm preparing a local mysql database with different UCSC > tables, including > ensGene/pep/gtp downloaded from the Table Browser. If I > understand correctly > these ensembl tables correspond to the last ensembl version > published in the > release notes here: > http://genome.ucsc.edu/goldenPath/releaseLog.html (it is > now version 62 in most cases)... > I also want to add those genomes that are absent in the > formal site (e.g. > Squirrel, Pika, Tree shrew, etc....), and found in > http://genome-test.cse.ucsc.edu. Ensembl table for these > genomes can be > downloaded from the Table Browser in the test site: > http://genome-test.cse.ucsc.edu/, but which ensembl version do > they > correspond to ? > > Best wishes, > Assaf > _______________________________________________ > Genome maillist - [email protected] > <mailto:[email protected]> > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
