Hi Eduardo, I wanted to let you know that the updated md5sum.txt for the Broad Histone track on hg19 is now on hgdownload: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/md5sum.txt
Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On 9/2/11 12:46 PM, Katrina Learned wrote: > Hi Eduardo, > > Thanks for bringing this to our attention. It looks like some of the > files were updated, but we forgot to update the md5sum.txt. We will get > this fixed as soon as we can. > > For now, please see the md5sum.txt on our genome-preview site > (http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/md5sum.txt) > which was generated more recently. There may be additional (not yet > released) files, but the files that you downloaded from our main public > site should also be listed. > > Genome-preview allows users to preview tracks before they have been > through our quality assurance process. Because genome-preview contains > pre-release data, please use discretion when downloading and viewing > data from genome-preview as it may still be undergoing changes and > improvements. > > Please contact the mail list ([email protected]) again if you have any > further questions. > > Katrina Learned > UCSC Genome Bioinformatics Group > > > On 9/2/11 8:37 AM, Eduardo Gade Gusmão wrote: >> Hello, I am downloading .bam, .bam.bai and .bigwig files from the Broad >> Histone track that belongs to these cell lines: HeLa S3, NHEK, HUVEC, K562, >> GM12878 and H1hESC. >> That's the link I am using: >> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/ >> >> The problem is that ALL of the .bigwig files that I have downloaded are >> failing through the MD5 sumcheck based on the md5sum.txt file that is also >> available at that link. >> I was downloading with wget command in linux. I also tried to download a >> single .bigwig with various browsers and with a high trusted connection, but >> .bigwig always fails the sumcheck. >> Other evidence that support that the problem is not in my connection is that >> I have downloaded the same kinds of file for the Duke DNaseI HS track and >> all the files passed the sumcheck. And even the .bam files from the Broad >> Histone track (that are as the same length in average as .bigwig) are >> passing the sumcheck. >> >> Is there any chance that your generated MD5sumcheck code is wrong? Can you >> please check again your md5sum.txt file? >> >> Thank you! >> ________________________________________________________________ >> Eduardo Gade Gusmão >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
