Hello Prakher, There is no need to have a single, unified GFF file to load your database. You can load them one at a time using bp_load_gff.pl (if you are using a Bio::DB::GFF database), or you can load several files at once into a fresh database using the bulk loader, with a command like this:
bp_bulk_load_gff.pl -d dbname -c -f *.fasta *.gff Scott On Mon, 2008-02-11 at 12:09 +0530, Prakher Singhal wrote: > Can I upload the .gff and .fa files in to the mysql database > ( chromosome wise ), instead of making one .gff and .fa file for all > the chromosomes and uploading in to the database? > > > > Regards, > Prakher Singhal > Computer Programmer > Institute of Bioinformatics and applied Biotechnology > Bangalore 560 066, > Tel: +91 (80) 2841-0029, 2841-2769 > Mob: +91 9886875191 > http://www.ibab.ac.in/ > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ Gmod-gbrowse mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse -- ------------------------------------------------------------------------ Scott Cain, Ph. D. [EMAIL PROTECTED] GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
