Hi Mustafa, I am curious if Sheldon's suggestion fixed your problem. It doesn't feel to me like it should be necessary, assuming you have a reference sequence line for your features in GFF, like this:
NC_009999 . region 1 1000000 . . . ID=NC_009999 However, I'm currently trying to debug behavior like this right now, so any information you could provide would be appreciated. Thanks, Scott On Mon, 2008-02-11 at 13:21 -0500, Sheldon McKay wrote: > Hi Mustafa, > > When I encounter this problem, I usually try adding a sequence-region > directive for each reference sequence (with the absolute start and end > coordinates), so that a full-length feature of that name and length > will be autogenerated when the GFF is processed for database loading. > > ##sequence-region NC_009999 1 1000000 > > Sheldon > > On Feb 11, 2008 12:31 PM, Syed Mustafa Hussain <[EMAIL PROTECTED]> wrote: > > Hi, > > > > I recently switched from in-memory to MySQL and have > > used bp_seqfeature_load.PLS script to create and load > > MySQL tables. > > > > Gbrowse interface is giving me the following error: > > > > "The landmark named NC_004347:3359971..3369971 is not > > recognized. See the help pages for suggestions" > > > > What might be wrong with database causing this error? > > > > Where can I get schema diagram to understand > > relational database created by above script. > > > > Mustafa. > > > > > > > > ____________________________________________________________________________________ > > Never miss a thing. Make Yahoo your home page. > > http://www.yahoo.com/r/hs > > > > > > ------------------------------------------------------------------------- > > This SF.net email is sponsored by: Microsoft > > Defy all challenges. Microsoft(R) Visual Studio 2008. > > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > _______________________________________________ > > Gmod-gbrowse mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse > > > > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. [EMAIL PROTECTED] GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
