Hi XAvier, "Single out" I mean pick up only the side chain bonded with alpha carbon atom and put them in a group using make_ndx.
With regards, Abu Naser School Of Life Sciences Heriot-Watt University Edinburgh EH14 4AS Email: [EMAIL PROTECTED] Phone: +44(0)1314518265 Fax : +44(0) 131 451 3009 -----Original Message----- From: [EMAIL PROTECTED] on behalf of Xavier Periole Sent: Wed 26/09/2007 8:42 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] make_ndx On Wed, 26 Sep 2007 20:08:06 +0100 "Naser, Md Abu" <[EMAIL PROTECTED]> wrote: > Hi All User, > > Is there anyway I can single out side chain of alpha carbon atom using >make_ndx? What do you mean by "single out" and with "side chain of alpha carbon" ? > > Thanks in advance. > > Abu Naser > > School Of Life Sciences > Heriot-Watt University > Edinburgh EH14 4AS > Email: [EMAIL PROTECTED] > Phone: +44(0)1314518265 >Fax : +44(0) 131 451 3009 > > > > ----------------------------------------------------- XAvier Periole - PhD 1- Institute of Molecular Assemblies City University of New York - USA 2- Molecular Dynamics-Group University of Groningen - The Netherlands http://md.chem.rug.nl/~periole ----------------------------------------------------- _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php