Thanks Mark,
I could do it following your suggestion.
Sarbani
On Wed, 24 Oct 2007 Mark Abraham wrote :
>sarbani chattopadhyay wrote:
>> hi,
>> I want to select two groups in the index file, one group consisting of
>> only the
aromatic
>>ring of phenylalanine and the other group consisting of only the alpha carbon.
>>I want to know the way to use the make_ndx command for this.
>
>After entering make_ndx, you can use "h<RETURN>" to get some primitive help.
>
>In this case, you can most quickly solve your problem by hand-editing. See
>http://
wiki.gromacs.org/index.php/Index_File
>
>Mark
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