sarbani chattopadhyay wrote:
hi,
I want to select two groups in the index file, one group consisting
of only the aromatic
ring of phenylalanine and the other group consisting of only the alpha
carbon.
I want to know the way to use the make_ndx command for this.
After entering make_ndx, you can use "h<RETURN>" to get some primitive
help.
In this case, you can most quickly solve your problem by hand-editing.
See http://wiki.gromacs.org/index.php/Index_File
Mark
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