hi i'm new to gromacs and want to simulate a protein inside a phospholipid
envelop (may be box or dodecahedron). for this i got the pdb files of both the
proteins and the lipids(e.g.POPC, POPE etc). but i'm facing a lot of problems
in generating the topology files as well as in running grompp as gromacs does
not support lipids. i also tested it by using the lipid.itp file in the top
directory. can anyone suggest me any tutorial where i can find detailed
discussion on this matter? and obviously some help in how to go for it??
Thanking you in advance
Shamik
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