Thanx Justin...i must go throuh that tutorial. thanx for the help.
--- On Fri, 29/5/09, Justin A. Lemkul <jalem...@vt.edu> wrote:
From: Justin A. Lemkul <jalem...@vt.edu>
Subject: Re: [gmx-users] membrane protein simulation
To: "Discussion list for GROMACS users" <gmx-users@gromacs.org>
Date: Friday, 29 May, 2009, 4:49 PM
Samik Bhattacharya wrote:
> hi i'm new to gromacs and want to simulate a protein inside a phospholipid
> envelop (may be box or dodecahedron). for this i got the pdb files of both
> the proteins and the lipids(e.g.POPC, POPE etc). but i'm facing a lot of
> problems in generating the topology files as well as in running grompp as
> gromacs does not support lipids. i also tested it by using the lipid.itp file
> in the top directory. can anyone suggest me any tutorial where i can find
> detailed discussion on this matter? and obviously some help in how to go for
> it??
Yes, there is a tutorial here:
http://wiki.gromacs.org/index.php/Membrane_Simulations#Running_Membrane_Simulations
-Justin
> Thanking you in advance
> Shamik
>
>
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-- ========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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