Samik Bhattacharya wrote:
hi i'm new to gromacs and want to simulate a protein inside a
phospholipid envelop (may be box or dodecahedron). for this i got the
pdb files of both the proteins and the lipids(e.g.POPC, POPE etc). but
i'm facing a lot of problems in generating the topology files as well as
in running grompp as gromacs does not support lipids. i also tested it
by using the lipid.itp file in the top directory. can anyone suggest me
any tutorial where i can find detailed discussion on this matter? and
obviously some help in how to go for it??
Yes, there is a tutorial here:
http://wiki.gromacs.org/index.php/Membrane_Simulations#Running_Membrane_Simulations
-Justin
Thanking you in advance
Shamik
------------------------------------------------------------------------
Own a website.Get an unlimited package.Pay next to nothing.* Click
here!.
<http://in.rd.yahoo.com/tagline_ysb_website/*http://in.business.yahoo.com/>
------------------------------------------------------------------------
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
