Hi, Apparently this is an issue with my intel compiler; the dynamic linker isn't finding the libiomp5.dylib library. However, I don't know how to fix this (the google results haven't worked.)
Please help, Thanks, John ________________________________ From: "Barnett, James W." <jbarn...@tulane.edu> To: <nimzs...@yahoo.com> Sent: Saturday, August 24, 2013 3:07 PM Subject: Re: [gmx-users] 'Command not found' after installation Unfortunately this is now beyond what I know with a Mac. It sounds like a library is missing that GROMACS needs, or GROMACS can't find it, which is probably a simple fix. Perhaps someone more familiar with Mac will be able to weigh in. jbarn...@tulane.edu | from mobile <nimzs...@yahoo.com> wrote: >This gives the following: > >dyld: Library not loaded: libiomp5.dylib > Referenced from: /usr/local/gromacs/bin/g_luck > Reason: image not found >Trace/BPT trap: 5 > >If I try 'pdb2gmx', it says: > >dyld: Library not loaded: libiomp5.dylib > Referenced from: /usr/local/gromacs/bin/pdb2gmx > Reason: image not found >Trace/BPT trap: 5 > >Did the installation not work properly? > > >________________________________ > From: "Barnett, James W." <jbarn...@tulane.edu> >To: Nimmy McNimmerson <nimzs...@yahoo.com>; Discussion list for GROMACS users ><gmx-users@gromacs.org> >Sent: Saturday, August 24, 2013 10:42 AM >Subject: Re: [gmx-users] 'Command not found' after installation > > >Try "g_luck". That's what has worked for me. > >On 08/24/2013 12:37 PM, Nimmy McNimmerson wrote: >> Hello all, >> I have been trying to get GROMACS (4.6.3) to work on my Mac (10.8.1). I >> downloaded the latest Intel C++ compilers and built Gromacs successfully (at >> least it appeared to be successful since I saw no error messages). I >> appended this line to my ~/.profile file: source >> /usr/local/gromacs/bin/GMXRC.bash, and restarted my terminal. Still, every >> time I type in a GROMACS command, such as "luck," it says "command not >> found." f I do echo $GMXDATA, it does return >> /usr/local/gromacs/share/gromacs, though. >> Thanks, >> John >> > > >-- >Wes Barnett | jbarn...@tulane.edu -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
