Hi, I don't have any experience with icc on Mac, but I would try either * re-reading the icc docs to see whether you should be source-ing some configuration file to set up the dynamic loading at run time (as well as at compile time), and/or * making a static build (cmake -DBUILD_SHARED_LIBS=off; but some Google hits suggests icc was broken at some point and iomp5 enforces dynamic linking, go figure!), * when you're really sure you've set up your build environment correctly, complaining at Intel (again) :-)
Mark On Sun, Aug 25, 2013 at 7:18 AM, Nimmy McNimmerson <nimzs...@yahoo.com> wrote: > Hi, > > Apparently this is an issue with my intel compiler; the dynamic linker isn't > finding the libiomp5.dylib library. However, I don't know how to fix this > (the google results haven't worked.) > > Please help, > > Thanks, > John > > > ________________________________ > From: "Barnett, James W." <jbarn...@tulane.edu> > To: <nimzs...@yahoo.com> > Sent: Saturday, August 24, 2013 3:07 PM > Subject: Re: [gmx-users] 'Command not found' after installation > > > Unfortunately this is now beyond what I know with a Mac. It sounds like a > library is missing that GROMACS needs, or GROMACS can't find it, which is > probably a simple fix. > > Perhaps someone more familiar with Mac will be able to weigh in. > > jbarn...@tulane.edu | from mobile > > <nimzs...@yahoo.com> wrote: > >>This gives the following: >> >>dyld: Library not loaded: libiomp5.dylib >> Referenced from: /usr/local/gromacs/bin/g_luck >> Reason: image not found >>Trace/BPT trap: 5 >> >>If I try 'pdb2gmx', it says: >> >>dyld: Library not loaded: libiomp5.dylib >> Referenced from: /usr/local/gromacs/bin/pdb2gmx >> Reason: image not found >>Trace/BPT trap: 5 >> >>Did the installation not work properly? >> >> >>________________________________ >> From: "Barnett, James W." <jbarn...@tulane.edu> >>To: Nimmy McNimmerson <nimzs...@yahoo.com>; Discussion list for GROMACS users >><gmx-users@gromacs.org> >>Sent: Saturday, August 24, 2013 10:42 AM >>Subject: Re: [gmx-users] 'Command not found' after installation >> >> >>Try "g_luck". That's what has worked for me. >> >>On 08/24/2013 12:37 PM, Nimmy McNimmerson wrote: >>> Hello all, >>> I have been trying to get GROMACS (4.6.3) to work on my Mac (10.8.1). I >>> downloaded the latest Intel C++ compilers and built Gromacs successfully >>> (at least it appeared to be successful since I saw no error messages). I >>> appended this line to my ~/.profile file: source >>> /usr/local/gromacs/bin/GMXRC.bash, and restarted my terminal. Still, every >>> time I type in a GROMACS command, such as "luck," it says "command not >>> found." f I do echo $GMXDATA, it does return >>> /usr/local/gromacs/share/gromacs, though. >>> Thanks, >>> John >>> >> >> >>-- >>Wes Barnett | jbarn...@tulane.edu > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists