#160: reproducible GPC, CDM refresh at a critical mass of GPC sites (PMO
milestone 2.4)
-----------------------------+----------------------------
Reporter: rwaitman | Owner: tgreen
Type: enhancement | Status: reopened
Priority: major | Milestone: data-domains3
Component: data-stds | Resolution:
Keywords: cdm; enrollment | Blocked By: 145, 347
Blocking: |
-----------------------------+----------------------------
Changes (by dconnolly):
* status: closed => reopened
* resolution: duplicate =>
Comment:
Now that the dust is settling a bit on building CDM v3, Russ reminds me of
the importance of a common reproducible approach.
At HackathonThree, we agreed to support the SCILHS approach (#381), and a
number of teams have reported their experience using it:
- DevTeams#kumc in #486
- DevTeams#cmh in ticket:191#comment:10
- DevTeams#mcw in a [http://listserv.kumc.edu/pipermail/gpc-
dev/2016q1/002670.html March 22 message] etc.
- DevTeams#mcrf in ticket:381#comment:6
- DevTeams#mu in ticket:191#comment:10
- DevTeams#uthscsa in #486
- DevTeams#utsw in a [http://listserv.kumc.edu/pipermail/gpc-
dev/2016q1/002490.html Feb 10 message] etc.
I believe these sites are using the SCILHS approach, though it might be
nice to get confirmation, as well as details on any adaptations they found
necessary:
- DevTeams#iu
- DevTeams#wisc
- DevTeams#umn
These sites report using other approaches:
- DevTeams#uiowa - using another approach for reasons explained at
HackathonThree:
- rather than doing one ETL to go from clarity tables to the long-
skinny i2b2 observation_fact table and then another to go back to CDM
tables, at UIOWA, we developed SQL code to populate CDM from Clarity. #464
is a ticket to share it
- DevTeams#unmc - using another approach due to some issue around ONC
standard coding that wasn't entirely clear at the time. #455 was assigned
to elaborate
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/160#comment:24>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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