Hi Joshua,
on the appliances MongoDB runs without a configuration file. Settings
are given by command line options. If you want to change something you
can add or delete options in the start script of MongoDB:
/opt/graylog/service/mongodb/run

Afterwards restart the service.

I think your confusion comes from the pre-build Graylog appliance. The
setup is fundamentally different than what is explained in the Graylog
installation documentation.
The appliance is not just a VM with an installed Graylog, dumped into
a file. It's an own world with special toolings. Making it easy for
new users to get everything running and play around with the different
operating modes of Graylog. To reach that the graylog-ctl command is
rendering all configuration files for you (this is also the reason for
redundant configurations in YAML format). You provide as little
informations as possible and the appliance will create a working setup
for you. The downside is that you can't just edit some files here and
there and fiddle around until you reach the state you are looking for.
The graylog-ctl command will reset your changes on the next
'reconfigure' run. Long story short either you pick an appliance
installation and everything is prepared for you (with some
limitations) or you manually install a server with Graylog and that
one will follow you own installation rules and standards.

Cheers,
Marius


On 13 December 2016 at 15:50, Joshua Waclawski <jbwaclaw...@gmail.com> wrote:
> Hey Jochen,
>
> Looks like you may be at least partially correct, my apologies for the
> confusion on this.  That section does point to most of the configuration
> files, I still need access to change configurations of MongoDB to close up
> some pretty problematic security holes.  That documentation is telling me
> that the settings for mongodb are stored in the graylog-settings.json file
> in /etc/graylog; I checked this file and don't see any mongo specific
> settings.  Is it as simple as adding the mongo configuration keys and values
> here and restarting graylog?
>
> On Sunday, December 11, 2016 at 6:53:34 AM UTC-5, Jochen Schalanda wrote:
>>
>> Hi Joshua,
>>
>> On Saturday, 10 December 2016 19:27:40 UTC+1, Joshua Waclawski wrote:
>>>
>>> As I mentioned in my previous post, that documentation is incorrect when
>>> using the EC2-AMI's provided on the graylog website. Here's some examples...
>>
>>
>> I think you've been looking at the wrong section of the documentation. The
>> paths in the AMIs are identical to the ones used in the OVA (because both
>> are based on the Omnibus package, just as the comment in the documentation
>> states):
>> http://docs.graylog.org/en/2.1/pages/configuration/file_location.html#omnibus-package
>>
>> Cheers,
>> Jochen
>
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