Dear Justin I built CNT by nano tube modeller. Then, I put protein (fragment model with 15 residues) in appropriate distance of CNT manually.
I used force field parameters from following paper: J. Phys. Chem. B 2001, 105, 9980-9987. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
