guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit a5c1b9f8a3e16a754538fb47ab157e7b2d3ea151
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Dec 9 20:29:43 2025 +0000
gnu: python-dask: Update to 2025.11.0.
* gnu/packages/python-science.scm (python-dask): Update to 2025.11.0.
[arguments] <test-flags>: Do not max out availalbe thread, keep them on
4 for stability; rework skipped/ignored tests.
<phases>: Remove 'versioneer, and 'patch-pyproject.
[propagated-inputs]: Remove python-dask-expr; add python-lz4 and
python-pyarrow.
[native-inputs]: Remove python-importlib-metadata and python-versioneer;
add python-pytest-asyncio, python-pytest-mock, python-pytest-timeout,
python-setuptools-scm-next, and tzdata-for-tests.
Change-Id: I8234ad1923a2a228c9c240bb34c9e1c9dfcbbd55
---
gnu/packages/python-science.scm | 115 ++++++++++++++--------------------------
1 file changed, 40 insertions(+), 75 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 28298c208a..139780f5bb 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -714,104 +714,69 @@ optimization problems in Python.")
(define-public python-dask
(package
(name "python-dask")
- (version "2024.12.1")
+ (version "2025.11.0")
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dask/dask/";)
- (commit version)))
+ (url "https://github.com/dask/dask/";)
+ (commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "17iqfyjphyn72xdr8fmynzvixskbq16pwmsknwc6anq7s2axvas2"))))
+ (base32 "12m4p4zfm96fjsm45wppdrylsi71vjr0ywplz6q7fhw9vbhk0kki"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; Avoid coverage
+ ;; tests: 15277 passed, 751 skipped, 261 xfailed, 280 xpassed, 90
warnings
#:test-flags
- #~(list "--numprocesses" (number->string (parallel-job-count))
- "-m" "not gpu and not slow and not network"
- ;; These all fail with different hashes. Doesn't seem
- ;; problematic.
- "--ignore-glob=**/test_tokenize.py"
- ;; ORC tests crash Python with a failure to find the global
- ;; localtime file. See also
- ;; https://github.com/apache/arrow/issues/40633.
- "--ignore-glob=**/test_orc.py"
- "-k" (string-append
+ #~(list "-m" "not gpu and not slow and not network"
+ "--pyargs" "dask"
+ "--numprocesses" (number->string (min 4 (parallel-job-count)))
+ "--reruns=3"
+ "-k" (string-join
;; This one cannot be interrupted.
- "not test_interrupt"
- ;; This one fails with "local variable 'ctx' referenced
- ;; before assignment". Maybe enable this in later
- ;; versions (or when pandas has been upgraded.
- " and not test_dt_accessor"
- ;; This fails when dask-expr is among the inputs.
- " and not test_groupby_internal_repr"
- ;; This fails with different job ids.
- " and not test_to_delayed_optimize_graph"
- ;; This one expects a deprecation warning that never
- ;; comes.
- " and not test_RandomState_only_funcs"
- ;; This test expects a RuntimeWarning that is never
- ;; raised.
- " and not test_nanquantile_all_nan")
- ;; Tests must run from the output directory, because otherwise
- ;; it complains about the difference between the target
- ;; directory embedded in the pyc files and the source directory
- ;; from which we run tests.
- (getcwd))
+ (list "not test_interrupt"
+ ;; AttributeError: 'Array' object has no attribute
+ ;; 'expr'
+ "test_blockwise"
+ "test_is_dask_collection_doesnt_materialize")
+ " and not "))
#:phases
#~(modify-phases %standard-phases
- (add-after 'unpack 'versioneer
- (lambda _
- ;; Our version of versioneer needs setup.cfg. This is adapted
- ;; from pyproject.toml.
- (with-output-to-file "setup.cfg"
- (lambda ()
- (display "\
-[versioneer]
-VCS = git
-style = pep440
-versionfile_source = dask/_version.py
-versionfile_build = dask/_version.py
-tag_prefix =
-parentdir_prefix = dask-
-")))
- (invoke "versioneer" "install")
- (substitute* "setup.py"
- (("versioneer.get_version\\(\\)")
- (string-append "\"" #$version "\"")))))
(add-after 'unpack 'fix-pytest-config
(lambda _
- ;; This option is not supported by our version of pytest.
(substitute* "pyproject.toml"
- (("--cov-config=pyproject.toml") ""))))
- (add-after 'unpack 'patch-pyproject
+ ((".*--cov-config=pyproject.toml.*") ""))))
+ (add-before 'build 'set-version
(lambda _
- ;; We use pyarrow > 14
- (substitute* "pyproject.toml"
- (("\"pyarrow_hotfix\",") ""))))
- (add-before 'check 'pre-check
- (lambda _ (chdir "/tmp"))))))
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
+ (add-before 'check 'remove-local-source
+ (lambda _
+ (delete-file-recursively "dask"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-asyncio
+ python-pytest-mock
+ python-pytest-rerunfailures
+ python-pytest-timeout
+ python-pytest-xdist
+ python-setuptools
+ python-setuptools-scm-next
+ tzdata-for-tests))
(propagated-inputs
- (list python-click ;needed at runtime
+ (list python-click
python-cloudpickle
- python-dask-expr
python-fsspec
- python-importlib-metadata ;needed at runtime for
dask/_compatibility.py
- python-numpy
+ python-importlib-metadata
python-packaging
- python-pandas
python-partd
+ python-pyyaml
python-toolz
- python-pyyaml))
- (native-inputs
- (list python-importlib-metadata
- python-pytest
- python-pytest-rerunfailures
- python-pytest-xdist
- python-versioneer
- python-setuptools))
+ ;; [optional]
+ python-lz4
+ python-numpy
+ python-pandas
+ python-pyarrow))
(home-page "https://github.com/dask/dask/";)
(synopsis "Parallel computing with task scheduling")
(description
