Re: [HCP-Users] -cifti-separate

[Glasser, Matthew]

Use ${StudyFolder}/${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.${Hemisphere}.midthickness.32k_fs_LR.surf.gii Peace, Matt. From: Marta Moreno <mmorenoort...@icloud.com> Date: Monday, January 12, 2015 at 10:15 PM To: Matt Glasser <glass...@wusm.wustl.edu> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] -cifti-separate Is data created by the HCP pipeline. I made a t-map and saved it as a cifti file with 91K brain ordinates and I would like to cluster extent thresholding using the -cifti-fiind-clusters command but I am not sure what to use as the surface inputs files. Thanks, _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons On Jan 12, 2015, at 11:09 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote: Is this HCP data or your own data? Matt. From: Marta Moreno <mmorenoort...@icloud.com> Date: Monday, January 12, 2015 at 10:06 PM To: Matt Glasser <glass...@wusm.wustl.edu> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] -cifti-separate What is the required surface input for -cifti-find-clusters? Thanks, _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote: I didn’t read your question closely enough.  You cannot make a surface from -cifti-separate (you can make data that you can display and analyze on a surface however). Peace, Matt. From: Marta Moreno <mmorenoort...@icloud.com> Date: Monday, January 12, 2015 at 9:59 PM To: Matt Glasser <glass...@wusm.wustl.edu> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] -cifti-separate wb_command <cifti-in> COLUMN -metric CORTEX_RIGHT <metric-out> Thanks, _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote: Please post your wb_command -cifti-separate command line. Peace, Matt. From: Marta Moreno <mmorenoort...@icloud.com> Date: Monday, January 12, 2015 at 9:52 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] -cifti-separate Hi users, I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command. The output from cifti-separate is not recognized. How do I convert it to a format that will work with cifti-find-clusters? I tried -metric-convert but to no avail.  Thank you, _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. 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