Thank you I appreciate your help!
All the best,
_______________
Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Division of Experimental Therapeutics
New York State Psychiatric Institute
Department of Psychiatry
Columbia University College of Physicians and Surgeons
On Jan 12, 2015, at 11:19 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu>
wrote:
> Use
> ${StudyFolder}/${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.${Hemisphere}.midthickness.32k_fs_LR.surf.gii
>
> Peace,
>
> Matt.
>
> From: Marta Moreno <mmorenoort...@icloud.com>
> Date: Monday, January 12, 2015 at 10:15 PM
> To: Matt Glasser <glass...@wusm.wustl.edu>
> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: Re: [HCP-Users] -cifti-separate
>
> Is data created by the HCP pipeline.
> I made a t-map and saved it as a cifti file with 91K brain ordinates and I
> would like to cluster extent thresholding using the -cifti-fiind-clusters
> command but I am not sure what to use as the surface inputs files.
>
> Thanks,
> _______________
> Marta Moreno-Ortega, Ph.D.
> Postdoctoral Research Fellow
> Division of Experimental Therapeutics
> New York State Psychiatric Institute
> Department of Psychiatry
> Columbia University College of Physicians and Surgeons
>
>
>
>
> On Jan 12, 2015, at 11:09 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu>
> wrote:
>
>> Is this HCP data or your own data?
>>
>> Matt.
>>
>> From: Marta Moreno <mmorenoort...@icloud.com>
>> Date: Monday, January 12, 2015 at 10:06 PM
>> To: Matt Glasser <glass...@wusm.wustl.edu>
>> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>> Subject: Re: [HCP-Users] -cifti-separate
>>
>> What is the required surface input for -cifti-find-clusters?
>>
>> Thanks,
>> _______________
>> Marta Moreno-Ortega, Ph.D.
>> Postdoctoral Research Fellow
>> Division of Experimental Therapeutics
>> New York State Psychiatric Institute
>> Department of Psychiatry
>> Columbia University College of Physicians and Surgeons
>>
>>
>>
>>
>> On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu>
>> wrote:
>>
>>> I didn’t read your question closely enough. You cannot make a surface from
>>> -cifti-separate (you can make data that you can display and analyze on a
>>> surface however).
>>>
>>> Peace,
>>>
>>> Matt.
>>>
>>> From: Marta Moreno <mmorenoort...@icloud.com>
>>> Date: Monday, January 12, 2015 at 9:59 PM
>>> To: Matt Glasser <glass...@wusm.wustl.edu>
>>> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>>> Subject: Re: [HCP-Users] -cifti-separate
>>>
>>> wb_command <cifti-in> COLUMN -metric CORTEX_RIGHT <metric-out>
>>>
>>> Thanks,
>>> _______________
>>> Marta Moreno-Ortega, Ph.D.
>>> Postdoctoral Research Fellow
>>> Division of Experimental Therapeutics
>>> New York State Psychiatric Institute
>>> Department of Psychiatry
>>> Columbia University College of Physicians and Surgeons
>>>
>>>
>>>
>>>
>>> On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu>
>>> wrote:
>>>
>>>> Please post your wb_command -cifti-separate command line.
>>>>
>>>> Peace,
>>>>
>>>> Matt.
>>>>
>>>> From: Marta Moreno <mmorenoort...@icloud.com>
>>>> Date: Monday, January 12, 2015 at 9:52 PM
>>>> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>>>> Subject: [HCP-Users] -cifti-separate
>>>>
>>>> Hi users,
>>>>
>>>> I am using the -cifti-separate command to generate a surface (i.e. CORTEX
>>>> RIGHT) to use as right surface input to the -cifti-find-clusters command.
>>>> The output from cifti-separate is not recognized. How do I convert it to a
>>>> format that will work with cifti-find-clusters? I tried -metric-convert
>>>> but to no avail.
>>>>
>>>> Thank you,
>>>>
>>>> _______________
>>>> Marta Moreno-Ortega, Ph.D.
>>>> Postdoctoral Research Fellow
>>>> Division of Experimental Therapeutics
>>>> New York State Psychiatric Institute
>>>> Department of Psychiatry
>>>> Columbia University College of Physicians and Surgeons
>>>>
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> HCP-Users mailing list
>>>> HCP-Users@humanconnectome.org
>>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>>>
>>>>
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>>>> this email in error, please immediately notify the sender via telephone or
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>>>
>>>
>>>
>>> The materials in this message are private and may contain Protected
>>> Healthcare Information or other information of a sensitive nature. If you
>>> are not the intended recipient, be advised that any unauthorized use,
>>> disclosure, copying or the taking of any action in reliance on the contents
>>> of this information is strictly prohibited. If you have received this email
>>> in error, please immediately notify the sender via telephone or return mail.
>>
>>
>>
>> The materials in this message are private and may contain Protected
>> Healthcare Information or other information of a sensitive nature. If you
>> are not the intended recipient, be advised that any unauthorized use,
>> disclosure, copying or the taking of any action in reliance on the contents
>> of this information is strictly prohibited. If you have received this email
>> in error, please immediately notify the sender via telephone or return mail.
>
>
>
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you are
> not the intended recipient, be advised that any unauthorized use, disclosure,
> copying or the taking of any action in reliance on the contents of this
> information is strictly prohibited. If you have received this email in error,
> please immediately notify the sender via telephone or return mail.
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