Ekin, On May 15, 2014, at 1:42 PM, Ekin Akoglu <[email protected]> wrote:
> Dear Elena, > > Changing to the directory hdf5-1.8.13/fortran/examples and then issuing > > $ h5fc -o h5_crtdat h5_crtdat.f90 > > works. However, the check-install complains about not being able to open > h5_crtdat.o to write, which already exists. I checked the permissions of that > file and they are correct: 644, so write is allowed. > > Do you have an idea? > No idea at this point. We couldn't reproduce the problem here on one of our machines with Intel Fortran compiler. Could you please try to run run-fortran-ex.sh in that directory? ./run-fortran-ex.sh Thank you! Elena > Thank you, > > Ekin > > > On 15 May 2014 19:47, Elena Pourmal <[email protected]> wrote: > Ekin, > > It looks like that for some reason Fortran compiler cannot write *.o file. > Could it be that you ran out of space? Is there quota on your system? Was > /tmp partition full? > > I would try to run make check-install the second time, or go to > /usr/local/hdf5-1.8.13/share/hdf5_examples/fortran and try to run the > following command > > ../../../bin/h5fc -o h5_crtdat h5_crtdat.f90 > > and see if it works. > > Elena > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Elena Pourmal The HDF Group http://hdfgroup.org > 1800 So. Oak St., Suite 203, Champaign IL 61820 > 217.531.6112 > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > > > > On May 15, 2014, at 10:30 AM, Ekin Akoglu <[email protected]> wrote: > >> Dear Elena, >> >> The OS is 64-bit Debian Wheezy 7.5. The compiler is Intel Fortran Compiler >> 2013 SP1 Update 3, which is exactly 14.0.3 20140422. My GCC version is >> 4.7.2. I built and installed HDF5 as follows: >> >> $ ./configure --prefix=/usr/local/hdf5-1.8.13 --enable-fortran >> --enable-fortran2003 >> $ make >> $ make check >> # make install >> $ make check-install >> >> Everything except the "make check-install" step worked flawlessly. >> >> Thank you. >> >> Kind regards, >> >> Ekin >> >> On 15 May 2014 17:11, Elena Pourmal <[email protected]> wrote: >> Ekin, >> >> Could you please provide OS and compiler information? It would also help if >> you post the outputs of the commands used to build and install the HDF5 >> libraries. >> >> Thank you! >> >> Elena >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Elena Pourmal The HDF Group http://hdfgroup.org >> 1800 So. Oak St., Suite 203, Champaign IL 61820 >> 217.531.6112 >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >> >> >> On May 15, 2014, at 9:10 AM, Ekin Akoglu <[email protected]> wrote: >> >>> Dear all, >>> >>> I have just installed the HDF5 version 1.8.13 and the check-install process >>> failed with: >>> >>> ============================ >>> Testing run-fortran-ex.sh >>> ============================ >>> >>> ################# h5_crtdat ################# >>> error: can't open file h5_crtdat.o for write >>> compilation aborted for h5_crtdat.f90 (code 1) >>> messed up compiling h5_crtdat.f90 >>> rm: cannot remove `*.o': No such file or directory >>> rm: cannot remove `*.h5': No such file or directory >>> >>> make[3]: *** [installcheck-local] Error 1 >>> make[3]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran/examples' >>> make[2]: *** [installcheck-local] Error 1 >>> make[2]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>> make[1]: *** [installcheck-recursive] Error 1 >>> make[1]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>> make: *** [installcheck-recursive] Error 1 >>> >>> Regards, >>> >>> Ekin >>> >>> On 15 May 2014 15:20, <[email protected]> wrote: >>> >>> >>> To view from a browser see: >>> http://www.hdfgroup.org/newsletters/newsletter140.html >>> >>> -------------------------------------------------------------------------- >>> The HDF Group Home Page: http://www.hdfgroup.org/ >>> Support Services: http://www.hdfgroup.org/services/ >>> -------------------------------------------------------------------------- >>> >>> Newsletter #140 >>> May 15, 2014 >>> >>> CONTENTS >>> . Release of HDF5-1.8.13 >>> >>> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - >>> >>> Release of HDF5 1.8.13 >>> ====================== >>> >>> The HDF5-1.8.13 release is now available, and can be downloaded from the >>> HDF Group Downloads page: >>> >>> http://www.hdfgroup.org/downloads/ >>> >>> It can also be obtained directly from: >>> >>> http://www.hdfgroup.org/HDF5/release/obtain5.html >>> >>> HDF5-1.8.13 is a minor release, with a few new features and changes. >>> Important changes include: >>> >>> o The H5free_memory (C) api was added to free memory that was allocated >>> by HDF5 API calls. This was added specifically for Windows, but may be >>> useful anywhere that the library uses a different memory manager than >>> the application. >>> >>> o New wrappers were added for C++ (many) and Fortran >>> (h5pset_file_image_f and h5pget_file_image_f). >>> >>> o Mac OS X 10.9 Mavericks is now supported. >>> >>> o Many improvements were added in support of CMake, including the >>> addition of support for CMake 2.8.11. >>> >>> o Improvements were added to the Core VFD (or Memory VFD). >>> >>> o The following changes were made to Parallel HDF5: >>> >>> - The MPI-POSIX VFD was removed. Application developers should >>> always use the MPI-IO VFD. >>> >>> - Parallel HDF5 now supports collective I/O on point selections. >>> >>> o A few changes were added to the tools (h5diff, h5dump, and h5repack). >>> >>> This release contains many other changes that are not listed here. >>> Please be sure to read the Release Notes for a comprehensive list of >>> new features and changes: >>> >>> http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt >>> >>> Changes that affect maintainers of HDF5-dependent applications are >>> listed in "HDF5 Software Changes from Release to Release". See: >>> >>> http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html >>> >>> >>> >>> Future Changes to Supported Platforms >>> ------------------------------------- >>> >>> Please be aware that after this release, we will be moving to >>> CMake 3.0, and will add testing for VS 2013. VS 2012 will remain >>> the standard. >>> >>> In addition, we will only support Cygwin built with CMake, and will >>> be dropping VS 2010. >>> >>> >>> >>> ------------------------------------------------------------- >>> For questions regarding these or other HDF issues, contact: >>> >>> [email protected] >>> >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
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