Dear Elena, Running ./run-fortran-ex.sh gives a similar error:
################# h5_crtdat ################# ./run-fortran-ex.sh: 57: ./run-fortran-ex.sh: ../../..//bin/h5fc: not found messed up compiling h5_crtdat.f90 rm: cannot remove `*.o': No such file or directory rm: cannot remove `*.h5': No such file or directory However, I checked and h5fc is in my PATH. Thank you. Ekin On 15 May 2014 21:35, Elena Pourmal <[email protected]> wrote: > Ekin, > > On May 15, 2014, at 1:42 PM, Ekin Akoglu <[email protected]> wrote: > > Dear Elena, > > Changing to the directory hdf5-1.8.13/fortran/examples and then issuing > > $ h5fc -o h5_crtdat h5_crtdat.f90 > > works. However, the check-install complains about not being able to open > h5_crtdat.o to write, which already exists. I checked the permissions of > that file and they are correct: 644, so write is allowed. > > Do you have an idea? > > No idea at this point. We couldn't reproduce the problem here on one of > our machines with Intel Fortran compiler. > > Could you please try to run run-fortran-ex.sh in that directory? > > ./run-fortran-ex.sh > > Thank you! > > Elena > > Thank you, > > Ekin > > > On 15 May 2014 19:47, Elena Pourmal <[email protected]> wrote: > >> Ekin, >> >> It looks like that for some reason Fortran compiler cannot write *.o >> file. Could it be that you ran out of space? Is there quota on your system? >> Was /tmp partition full? >> >> I would try to run make check-install the second time, or go to >> /usr/local/hdf5-1.8.13/share/hdf5_examples/fortran and try to run the >> following command >> >> ../../../bin/h5fc -o h5_crtdat h5_crtdat.f90 >> >> and see if it works. >> >> Elena >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Elena Pourmal The HDF Group http://hdfgroup.org >> 1800 So. Oak St., Suite 203, Champaign IL 61820 >> 217.531.6112 >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >> >> >> On May 15, 2014, at 10:30 AM, Ekin Akoglu <[email protected]> wrote: >> >> Dear Elena, >> >> The OS is 64-bit Debian Wheezy 7.5. The compiler is Intel Fortran >> Compiler 2013 SP1 Update 3, which is exactly 14.0.3 20140422. My GCC >> version is 4.7.2. I built and installed HDF5 as follows: >> >> $ ./configure --prefix=/usr/local/hdf5-1.8.13 --enable-fortran >> --enable-fortran2003 >> $ make >> $ make check >> # make install >> $ make check-install >> >> Everything except the "make check-install" step worked flawlessly. >> >> Thank you. >> >> Kind regards, >> >> Ekin >> >> On 15 May 2014 17:11, Elena Pourmal <[email protected]> wrote: >> >>> Ekin, >>> >>> Could you please provide OS and compiler information? It would also help >>> if you post the outputs of the commands used to build and install the HDF5 >>> libraries. >>> >>> Thank you! >>> >>> Elena >>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>> Elena Pourmal The HDF Group http://hdfgroup.org >>> 1800 So. Oak St., Suite 203, Champaign IL 61820 >>> 217.531.6112 >>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >>> >>> >>> >>> >>> On May 15, 2014, at 9:10 AM, Ekin Akoglu <[email protected]> wrote: >>> >>> Dear all, >>> >>> I have just installed the HDF5 version 1.8.13 and the check-install >>> process failed with: >>> >>> ============================ >>> Testing run-fortran-ex.sh >>> ============================ >>> >>> ################# h5_crtdat ################# >>> error: can't open file h5_crtdat.o for write >>> compilation aborted for h5_crtdat.f90 (code 1) >>> messed up compiling h5_crtdat.f90 >>> rm: cannot remove `*.o': No such file or directory >>> rm: cannot remove `*.h5': No such file or directory >>> >>> make[3]: *** [installcheck-local] Error 1 >>> make[3]: Leaving directory >>> `/home/ekin/Tools/hdf5-1.8.13/fortran/examples' >>> make[2]: *** [installcheck-local] Error 1 >>> make[2]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>> make[1]: *** [installcheck-recursive] Error 1 >>> make[1]: Leaving directory `/home/ekin/Tools/hdf5-1.8.13/fortran' >>> make: *** [installcheck-recursive] Error 1 >>> >>> Regards, >>> >>> Ekin >>> >>> On 15 May 2014 15:20, <[email protected]> wrote: >>> >>>> >>>> >>>> To view from a browser see: >>>> http://www.hdfgroup.org/newsletters/newsletter140.html >>>> >>>> ------------------------------------------------------------ >>>> -------------- >>>> The HDF Group Home Page: http://www.hdfgroup.org/ >>>> Support Services: http://www.hdfgroup.org/ >>>> services/ >>>> ------------------------------------------------------------ >>>> -------------- >>>> >>>> Newsletter #140 >>>> May 15, 2014 >>>> >>>> CONTENTS >>>> . Release of HDF5-1.8.13 >>>> >>>> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - >>>> - - >>>> >>>> Release of HDF5 1.8.13 >>>> ====================== >>>> >>>> The HDF5-1.8.13 release is now available, and can be downloaded from the >>>> HDF Group Downloads page: >>>> >>>> http://www.hdfgroup.org/downloads/ >>>> >>>> It can also be obtained directly from: >>>> >>>> http://www.hdfgroup.org/HDF5/release/obtain5.html >>>> >>>> HDF5-1.8.13 is a minor release, with a few new features and changes. >>>> Important changes include: >>>> >>>> o The H5free_memory (C) api was added to free memory that was allocated >>>> by HDF5 API calls. This was added specifically for Windows, but may >>>> be >>>> useful anywhere that the library uses a different memory manager than >>>> the application. >>>> >>>> o New wrappers were added for C++ (many) and Fortran >>>> (h5pset_file_image_f and h5pget_file_image_f). >>>> >>>> o Mac OS X 10.9 Mavericks is now supported. >>>> >>>> o Many improvements were added in support of CMake, including the >>>> addition of support for CMake 2.8.11. >>>> >>>> o Improvements were added to the Core VFD (or Memory VFD). >>>> >>>> o The following changes were made to Parallel HDF5: >>>> >>>> - The MPI-POSIX VFD was removed. Application developers should >>>> always use the MPI-IO VFD. >>>> >>>> - Parallel HDF5 now supports collective I/O on point selections. >>>> >>>> o A few changes were added to the tools (h5diff, h5dump, and h5repack). >>>> >>>> This release contains many other changes that are not listed here. >>>> Please be sure to read the Release Notes for a comprehensive list of >>>> new features and changes: >>>> >>>> http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt >>>> >>>> Changes that affect maintainers of HDF5-dependent applications are >>>> listed in "HDF5 Software Changes from Release to Release". See: >>>> >>>> http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html >>>> >>>> >>>> >>>> Future Changes to Supported Platforms >>>> ------------------------------------- >>>> >>>> Please be aware that after this release, we will be moving to >>>> CMake 3.0, and will add testing for VS 2013. VS 2012 will remain >>>> the standard. >>>> >>>> In addition, we will only support Cygwin built with CMake, and will >>>> be dropping VS 2010. >>>> >>>> >>>> >>>> ------------------------------------------------------------- >>>> For questions regarding these or other HDF issues, contact: >>>> >>>> [email protected] >>>> >>>> >>>> _______________________________________________ >>>> Hdf-forum is for HDF software users discussion. >>>> [email protected] >>>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf- >>>> forum_lists.hdfgroup.org >>>> >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >>> >>> >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> >>> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >>> >>> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > >
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