Ok I figured out what's going on. I did a test with less images and it worked perfectly. So then I went back to the pano I was working on and started removing images thinking maybe it was too many in the row. I had one stack that it couldn't find any CPs, as soon as I removed that stack then it ran step 4 from the wiki. It looks like the code exits out if not all the images are connected to at least one other image. It would seem better to just go ahead and try to do step 3 (alignment for determining overlap) and running step 4 (CP finder between overlapping imges) even when there is an image or stack that can't be paired with another image.
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