Maybe you misunderstand something here: output cropping is not applied to the view which lux shows on-screen. lux shows all content which the source images provide, except for the parts which are excluded by source image cropping. Output cropping is only applied when the output is written to an image file and the p-line in the PTO file is applied (press Shift+E). The p-line has no effect on the on-screen view at all. If you want to view readily-cropped output, re-load the stitched image.
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