Hi Philippe, According to `mvn dependency:list` on the thunderstorm source code, there are no dependencies on any ImageJ2 libraries. Therefore, you should be able to run the software with vanilla ImageJ. My suggestion for how to achieve this most easily is:
git clone https://github.com/zitmen/thunderstorm cd thunderstorm mvn dependency:copy-dependencies cp target/dependency/*.jar /path/to/ImageJ/jars And you will have the needed dependencies for the thunderstorm plugin. You will also need the thunderstorm JAR file itself, of course. If you want to build that from source, you can: mvn package cp target/ThunderSTORM*.jar /path/to/ImageJ/plugins Regards, Curtis On Tue, Apr 16, 2024 at 1:19 PM CARL Philippe (LBP) < [email protected]> wrote: > Dear all, > Is it mandatory to use Fiji (instead the vanilla version of ImageJ) when > using a plugin implementing the snakeyaml library ( > https://mvnrepository.com/artifact/org.yaml/snakeyaml) like thunderSTORM ( > https://zitmen.github.io/thunderstorm/)? > I thank you very much in advance for your lighting on this. > My best regards, > Philippe > > Philippe CARL > Laboratoire de Bioimagerie et Pathologies > UMR 7021 CNRS - Université de Strasbourg > Faculté de Pharmacie > 74 route du Rhin > 67401 ILLKIRCH > Tel : +33(0)3 68 85 41 41 > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
