Dear all,

I was wondering if there is an option in Jalview to representation 
alignment with a reference sequence (first row) and other sequences with 
dots for identity to this reference sequence?

Such as here: 
https://www.researchgate.net/figure/225287367_fig1_Multiple-sequence-alignment-of-target-primer-and-probe-sequences.-Dots-indicated

Thanks for your help,
Romain

-- 
Romain Studer
EMBL-EBI
Wellcome Genome Campus
Hinxton
Cambridgeshire
CB10 1SD, UK
Tel: +44 (0)1223 492 547
Twitter: @RomainStuder

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