We are using the latest production release of Jalview. A student did the following:
Having found a variant they wanted to visualise in exon ENSE00003533602 in the BRCA1 gene ENSG00000012048 transcript BRCA1-001 ENST00000357654 retrieved the genomic sequence from ENSEMBL using the Fetch Sequences option. The transcript was retrieved but was missing the desired exon. The exon is clearly included in the ENSEMBL website (both Gr38 and Gr37) Any ideas as to why this exon is not seen? It is very large (3426 aa), and trying to directly retrieve it with the Fetch Sequences also fails. ..d Dr David Martin Senior Lecturer in Bioinformatics College of Life Sciences University of Dundee The University of Dundee is a registered Scottish Charity, No: SC015096
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