I think there is a typo for ENSE00003522602 which does seem to appear as an exon feature in Jalview?
Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: [email protected] <[email protected]> on behalf of David Martin (Staff) <[email protected]> Sent: 21 March 2017 15:25:38 To: [email protected] Subject: [Jalview-discuss] Error retriving complete transcripts from ENSEMBL We are using the latest production release of Jalview. A student did the following: Having found a variant they wanted to visualise in exon ENSE00003533602 in the BRCA1 gene ENSG00000012048 transcript BRCA1-001 ENST00000357654 retrieved the genomic sequence from ENSEMBL using the Fetch Sequences option. The transcript was retrieved but was missing the desired exon. The exon is clearly included in the ENSEMBL website (both Gr38 and Gr37) Any ideas as to why this exon is not seen? It is very large (3426 aa), and trying to directly retrieve it with the Fetch Sequences also fails. ..d Dr David Martin Senior Lecturer in Bioinformatics College of Life Sciences University of Dundee The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
_______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
