On May 17, 2006, at 1:50 p, Bob Hanson wrote:
Thank you very much for taking the time to do this, Tim.
Timothy Driscoll wrote:
first time at the page it does load, but after approx 10 seconds
of 'spinning beachball' (does not happen with Jmol usually). the
second time at the page had no beachball, and a very short page
load time.
This is what I've been observing on Macs, and what Miguel has
observed with Linux. OK, so there is definitely something going on
there. With a colleague sitting at a Linux box, we observed Java
topping out its memory allocation and dying. I can't quite figure
out why this particular page is doing that. You don't see the same
at http://www.stolaf.edu/people/hansonr/jmol/test/proto/altloc.htm,
do you?
not at all. this page loads fine, almost all of the features seem to
work as advertised.
I do see an error when I click extractModel, though:
java.security.PrivilegedActionException:
java.lang.reflect.InvocationTargetException
at java.security.AccessController.doPrivileged(Native Method)
at sun.plugin.liveconnect.SecureInvocation$2.run
(SecureInvocation.java:212)
at java.security.AccessController.doPrivileged(Native Method)
at sun.plugin.liveconnect.SecureInvocation.CallMethod
(SecureInvocation.java:191)
at sun.plugin.liveconnect.SecureInvocation.access$300
(SecureInvocation.java:51)
at sun.plugin.liveconnect.SecureInvocation$CallMethodThread.run
(SecureInvocation.java:122)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at sun.plugin.javascript.invoke.JSInvoke.invoke(JSInvoke.java:19)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at sun.plugin.javascript.JSClassLoader.invoke(JSClassLoader.java:44)
at sun.plugin.liveconnect.PrivilegedCallMethodAction.run
(SecureInvocation.java:580)
... 6 more
Caused by: java.lang.StringIndexOutOfBoundsException: String index
out of range: -1
at java.lang.String.substring(String.java:1768)
at org.jmol.viewer.ModelManager.rFill(ModelManager.java:832)
at org.jmol.viewer.ModelManager.getBondRecordMOL(ModelManager.java:826)
at org.jmol.viewer.ModelManager.getModelExtract(ModelManager.java:800)
at org.jmol.viewer.Viewer.getModelExtract(Viewer.java:2985)
at org.jmol.viewer.PropertyManager.getPropertyAsObject
(PropertyManager.java:194)
at org.jmol.viewer.PropertyManager.getProperty(PropertyManager.java:
158)
at org.jmol.viewer.Viewer.getProperty(Viewer.java:2980)
at org.jmol.applet.Jmol.getPropertyAsString(Jmol.java:556)
at JmolApplet.getPropertyAsString(JmolApplet.java:72)
... 16 more
[3550] :Error - java.security.PrivilegedActionException:
java.security.PrivilegedActionException:
java.lang.reflect.InvocationTargetException
d) press LOAD. Everything seem to be OK?
nope. :-( third time at the page, I pushed the 'load' button and
it locked up my browser. I could not continue with the other steps.
Macs!!!
watch it, man. ;-)
tim
--
Timothy Driscoll em: [EMAIL PROTECTED]
Virginia Bioinformatics Institute ph: 540-231-3007
Bioinformatics I im: molvisions
Washington St., Blacksburg, VA 24061
"Pain heals. Chicks dig scars. Glory lasts forever."
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