Sir,
Thank a lot for your suggestions.
In the Script Console I typed - load files "ligand.mol2" "protein.mol2"
Now my protein.mol2 is loaded in frame2.1 and ligand.mol2 in frame1.1. I am
able to view them in seperate frames.
*Is there any possibility of viewing both the protein and the ligand
in the same
frame, which will enable me to view the ligand's docking with the protein?*
thanks and regards,
Sam
On Fri, Oct 7, 2011 at 5:06 PM, Robert Hanson <[email protected]> wrote:
> oh, ---
>
> load files protein.mol2 ligand.mol2
> frame *
> select 1.1 # protein
> select 2.1 # ligand
>
>
> On Fri, Oct 7, 2011 at 6:35 AM, Robert Hanson <[email protected]> wrote:
>
>> sure. But you may want to keep them as separate "frames" and just display
>> both frames. This is nice, because it allows you to more easily select one
>> or the other independently.
>>
>> load files protein.mol2 ligand.mol2
>>
>>
>>
>> On Fri, Oct 7, 2011 at 6:32 AM, Sam Paul D. <[email protected]>wrote:
>>
>>> hi,
>>> I have a ligand(.mol2 format) and protein(.mol2 format) file seperately.
>>>
>>> In Jmol, is there any possibility of viewing both the protein and the
>>> ligand in the same frame?
>>> thanks and regards,
>>> Sam
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> All of the data generated in your IT infrastructure is seriously
>>> valuable.
>>> Why? It contains a definitive record of application performance, security
>>> threats, fraudulent activity, and more. Splunk takes this data and makes
>>> sense of it. IT sense. And common sense.
>>> http://p.sf.net/sfu/splunk-d2dcopy2
>>> _______________________________________________
>>> Jmol-developers mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
> ------------------------------------------------------------------------------
> All of the data generated in your IT infrastructure is seriously valuable.
> Why? It contains a definitive record of application performance, security
> threats, fraudulent activity, and more. Splunk takes this data and makes
> sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-d2dcopy2
> _______________________________________________
> Jmol-developers mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
>
------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure contains a
definitive record of customers, application performance, security
threats, fraudulent activity and more. Splunk takes this data and makes
sense of it. Business sense. IT sense. Common sense.
http://p.sf.net/sfu/splunk-d2dcopy1
_______________________________________________
Jmol-developers mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-developers
