When I clicked "view all frames" both the ligand and the protein are seen in
the viewer. I am not able to see where the ligand is as both the protein and
the ligand are in stick and balls.
*1. Is there any possibility of viewing one frame as 'sticks and balls' and
the other frame as 'wireframe'?
2. Can change is colours be made for the ligand alone?*
regards,
Sam
On Mon, Oct 10, 2011 at 11:57 AM, Sam Paul D. <[email protected]>wrote:
> Sir,
> Thank a lot for your suggestions.
> In the Script Console I typed - load files "ligand.mol2" "protein.mol2"
> Now my protein.mol2 is loaded in frame2.1 and ligand.mol2 in frame1.1. I
> am able to view them in seperate frames.
> *Is there any possibility of viewing both the protein and the ligand in
> the same frame, which will enable me to view the ligand's docking with the
> protein?*
> thanks and regards,
> Sam
>
>
>
>
> On Fri, Oct 7, 2011 at 5:06 PM, Robert Hanson <[email protected]> wrote:
>
>> oh, ---
>>
>> load files protein.mol2 ligand.mol2
>> frame *
>> select 1.1 # protein
>> select 2.1 # ligand
>>
>>
>> On Fri, Oct 7, 2011 at 6:35 AM, Robert Hanson <[email protected]> wrote:
>>
>>> sure. But you may want to keep them as separate "frames" and just display
>>> both frames. This is nice, because it allows you to more easily select one
>>> or the other independently.
>>>
>>> load files protein.mol2 ligand.mol2
>>>
>>>
>>>
>>> On Fri, Oct 7, 2011 at 6:32 AM, Sam Paul D. <[email protected]>wrote:
>>>
>>>> hi,
>>>> I have a ligand(.mol2 format) and protein(.mol2 format) file
>>>> seperately.
>>>> In Jmol, is there any possibility of viewing both the protein and the
>>>> ligand in the same frame?
>>>> thanks and regards,
>>>> Sam
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> All of the data generated in your IT infrastructure is seriously
>>>> valuable.
>>>> Why? It contains a definitive record of application performance,
>>>> security
>>>> threats, fraudulent activity, and more. Splunk takes this data and makes
>>>> sense of it. IT sense. And common sense.
>>>> http://p.sf.net/sfu/splunk-d2dcopy2
>>>> _______________________________________________
>>>> Jmol-developers mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>> ------------------------------------------------------------------------------
>> All of the data generated in your IT infrastructure is seriously valuable.
>> Why? It contains a definitive record of application performance, security
>> threats, fraudulent activity, and more. Splunk takes this data and makes
>> sense of it. IT sense. And common sense.
>> http://p.sf.net/sfu/splunk-d2dcopy2
>> _______________________________________________
>> Jmol-developers mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>
>>
>
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