On write state in jmol 11.1.25: using
write state "file.spt" the quit application, reload structure, and script "file.spt" restored everything (including background color) but did not reproduce H bonds as H bonds, replacing them with regular bonds instead (see below). thanks! VB On Wednesday 21 March 2007 19:47, Frieda Reichsman wrote: > On Mar 21, 2007, at 2:21 PM, [EMAIL PROTECTED] wrote: > > from the Jmol application (not applet): > > > > write state "somefile.spt" > > > > > > then, at your leisure: > > > > script "somefile.spt" > > > > should get you back EXACTLY where you left off. If it doesn't I > > want to know! > > A couple of things that were not reproduced exactly with write state > in Jmol 11.1.18: > > - background applet color was black instead of white. > - incomplete rendering of hydrogen bonds created/modified with the > connect command > - backbone trace applied through most of the model was extended into > an area where it had not been present, when the state script was > called after a script that had the entire backbone in trace (i.e., it > did not turn the trace off in that area. I don't know whether a state > script is intended to work from a "blank slate" or whether it should > be able to follow any other script.) > - problem with isosurface, I think it did not appear. I know I wound > up putting it in by hand. > > Frieda > > /////////////////////////////////////////// > > Frieda Reichsman, PhD > Molecules in Motion > Interactive Molecular Structures > http://www.moleculesinmotion.com > > /////////////////////////////////////////// -- Dr. Volker Blum Theory Department Fritz Haber Institute of the Max Planck Society Faradayweg 4-6 D-14195 Berlin Germany Phone: +49 30 8413-4846 Fax: +49 30 8413 4700 email [EMAIL PROTECTED] "A physicist is the atoms' way of thinking about atoms." ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
