Thanks Jason, those URLs worked.
On my Mac, OSX 10.4.10, these work GREAT in Safari. I am delighted
that they automatically jump to the synced position when you have
rotated them when NOT synched, and then sync again. But pages are
terrific.
In Firefox, the first page seems fine. On the second page there are
sometimes hesitations. When this occurs, the page loads and then it
takes a while for Jmol to realize it is supposed to be syncing - then
it snaps to. This does not happen every time.
Frieda
On Aug 6, 2007, at 3:34 PM, Jason Persampieri wrote:
try these:
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
Although they don't appear synchronized at all to me.
On 8/6/07, Frieda Reichsman <[EMAIL PROTECTED] > wrote:
Pages not found, from these links.
Frieda
On Aug 6, 2007, at 2:41 PM, Bob Hanson wrote:
> If you are interested in this syncing business, please try
>
> http://chemapps.stolaf.edu/jmol/examples-11/sync.htm
>
> and
>
> http://chemapps.stolaf.edu/jmol/examples-11/sync4.htm
>
>
> This is a totally different way to sync the applets -- with applets
> talking directly to each other (no intermediate JavaScript). It's
> actually part of Jmol 11 already, just not advertised. The methods
> are:
>
> _jmolGetApplet("A").syncScript("slave") // designate as slave applet
>
> _jmolGetApplet("A").syncScript("on") // designate as driver and turn
> syncing on
>
> _jmolGetApplet("A").syncScript("off") // stop syncing
>
> I think you have to designate the slaves before you start syncing.
>
>
> I'm interested in whether this works better on Macs than the
> setTimeout
> polling business of compare.htm
>
> Bob
>
>
>
> Rolf Huehne wrote:
>
>> Bob Hanson wrote:
>>
>>
>>> Eric Martz wrote:
>>>
>>>
>>>
>>>> I surmise that it is still not possible to make the mouse actions
>>>> (rotate, zoom at least) in one jmol applet propagate to other
>>>> specified jmol applets on the same web page, thereby
synchronizing
>>>> their mouse-controlled movements. Again, I'd like to advocate
>>>> for this.
>>>>
>>>>
>>>>
>>>>
>>> I think it is possible.
>>>
>>>
>>>
>>>> Chime has mouse synchronization and it is fantastic for
>>>> comparing two
>>>> molecules. If you orient the two molecules in alignment at the
>>>> outset, mouse-controlled-rotations and zooms occur on both
>>>> molecules.
>>>> This makes comparisons ever so much easier and better. I'd like
>>>> to do
>>>> some 2-molecule comparisons in upcoming Jmol tutorials, but
without
>>>> synchronization, it is much less useful.
>>>>
>>>> In Chime, synchronization could be controlled only at embed time
>>>> (equivalent to <applet> parameters for Jmol). First, one needed
>>>> "sendmouse=true" and then one needed "target=[chime_name]" for
each
>>>> Chime whose movements are to be controlled by the one containing
>>>> these embed tags. I have seen pages with six Chimes, where all
>>>> followed the mouse actions in any one. Amazing to behold!
>>>>
>>>>
>>>>
>>>>
>>>>
>>> This, of course, is rather inflexible. With Jmol,
synchronization is
>>> carried out using a JavaScript timer:
>>>
>>> syncEnabled=true
>>>
>>> function startSync() {
>>> syncEnabled = true
>>> setTimeout("sync()",100)
>>> }
>>>
>>> function stopSync() {
>>> syncEnabled = false
>>> }
>>>
>>>
>>> sLast = ''
>>> inSync=false
>>> function sync() {
>>> if (inSync)return
>>> inSync=true
>>> if (syncEnabled) {
>>> var s = jmolGetPropertyAsArray("orientationInfo","","A").moveTo
>>> if (s != sLast)jmolScriptWait( s.replace(/1\.0/,"0.1"),"B")
>>> sLast = s
>>> inSync=false
>>> startSync()
>>> }
>>> inSync=false
>>> }
>>>
>>> In this way, one has far more control over the outcome than what
>>> Chime
>>> could do (I think). True, it's a bit more involved, but it
>>> registers ANY
>>> orientation change (spinning, for example), not just those
generated
>>> with the mouse. I think an argument could be made that this is
>>> exactly
>>> what JavaScript is for.
>>>
>>> See http://chemapps.stolaf.edu/jmol/docs/examples-11/compare2.htm
>>>
>>> I'm interested if this works on all browsers. I only tested it on
>>> a PC
>>> running Windows with Firefox.
>>>
>>>
>>>
>>
>> It worked with konqueror 3.5.5 on OpenSuSE 10.2.
>>
>> It didn't work with Firefox 2.0.0.5 on OpenSuSE 10.2.
>> The PDB file was loaded only in the left applet after clicking on
>> "load
>> PDB file". After manually loading the file in the right applet
>> there was
>> no synchronization and the border around the applet always stayed
>> white.
>> (Javascript error: applet.loadInline is not a function)
>>
>> Regards,
>> Rolf
>>
>>
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
>
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