Q: Does the same happen at
http://chemapps.stolaf.edu/jmol/docs/examples-11/simple.htm ? I'm not seeing
the problem there. Please try Jmol 11.7.36 and see if you have the same
problem.
On Thu, May 21, 2009 at 2:07 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> The work-around for this to to specify
>
> set pdbGetHeader true
>
> This allows Jmol to access the file once and save the header.
>
> But in general there are these issues with the signed applet. The file
> loading has to be done on the right "thread" and it could be that this is
> not set correctly in Jmol when you use the popup menu. I'll look into that.
>
> 2009/5/21 Angel Herráez <angel.herr...@uah.es>
>
> Hi all
>>
>> I am doing a little experimentation with parsing of macromolecule
>> sequence in pdb files and, as part of it, I am reading the PDBheader
>> info using jmolGetPropertyAsString("fileHeader")
>>
>> What I have just found is that this works for local files but fails
>> with a Java security warning when I load a file from PDB (using the
>> signed applet, 11.6.21, and 'load =2ACE')
>>
>> It says
>> java.security.AccessControlException: access denied
>> (java.net.SocketPermission www.rcsb.org resolve)
>>
>> The same happens when I try the pop-up menu > Show > File header,
>> so it seems a true result of Java security measures.
>> However, since the file has been downloaded, shouldn't Jmol have
>> already the header info? It seems that it is doing a new request from
>> the server.
>>
>> Is this expected?
>> Is there a way around it?
>> Will it happen even when the file is in the same server as the page?
>>
>> For the record, I'm interested in the SEQRES fields.
>>
>>
>>
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>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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