With Jmol 11.9.18, Safari 4.0.4, MacOS 10.5.8, and the following code:
<script type="text/javascript">
jmolInitialize('../../nosession/jmol');
jmolAppletInline([250, 250], '\n Marvin 10270415522D\n\n
9 9 0 0 0 0 999 V2000\n -2.2457 0.8188 0.0000 C 0 0
0 0 0 0 0 0 0 0 0 0\n -2.2457 -0.0063 0.0000 C 0 0 0 0 0
0 0 0 0 0 0 0\n -1.5313 -0.4188 0.0000 C 0 0 0 0 0 0 0 0
0 0 0 0\n -0.8168 -0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0 0
0\n -0.8168 0.8188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n
-0.1023 1.2313 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313
1.2313 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 2.8813
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 2.0563
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 7 1 1 0 0 0 0\n 7 5 2
0 0 0 0\n 1 2 2 0 0 0 0\n 2 3 1 0 0 0 0\n 3 4 2 0 0 0
0\n 4 5 1 0 0 0 0\n 5 6 1 0 0 0 0\n 8 9 1 0 0 0 0\n 7 9
1 0 0 0 0\nM APO 1 9 1\nM STY 1 1 SUP\nM SAL 1 2 8 9\nM
SBL 1 1 9\nM SMT 1 Et\nM END\n');
</script>
Jmol tells me that it is loading the applet, the clock begins, and the
structure never loads.
Same is true of this code:
<script type="text/javascript">
// <!--
function getMol_0() {
return '\n Marvin 10270415522D\n\n 9 9 0 0 0 0 999
V2000\n -2.2457 0.8188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n
-2.2457 -0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313
-0.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.8168
-0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.8168 0.8188
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.1023 1.2313 0.0000
O 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 1.2313 0.0000 C 0 0
0 0 0 0 0 0 0 0 0 0\n -1.5313 2.8813 0.0000 C 0 0 0 0 0
0 0 0 0 0 0 0\n -1.5313 2.0563 0.0000 C 0 0 0 0 0 0 0 0
0 0 0 0\n 7 1 1 0 0 0 0\n 7 5 2 0 0 0 0\n 1 2 2 0 0 0
0\n 2 3 1 0 0 0 0\n 3 4 2 0 0 0 0\n 4 5 1 0 0 0 0\n 5 6
1 0 0 0 0\n 8 9 1 0 0 0 0\n 7 9 1 0 0 0 0\nM APO 1 9
1\nM STY 1 1 SUP\nM SAL 1 2 8 9\nM SBL 1 1 9\nM SMT 1
Et\nM END\n';
}
// -->
</script>
<table style="margin-left:auto; margin-right:auto;">
<tr><td style="text-align:center;">
<script type="text/javascript">
jmolInitialize('../nosession/jmol');
jmolAppletInline([250, 250], getMol_0(),
'background [xf6edf7];');
</script>
</td>
</tr>
</table>
Sorry to be so much trouble.
-- Bob G.
________________________________
From: Robert Hanson <hans...@stolaf.edu>
Reply-To: <jmol-users@lists.sourceforge.net>
Date: Thu, 14 Jan 2010 11:19:40 -0500
To: <jmol-users@lists.sourceforge.net>
Conversation: [Jmol-users] Jmol usually not displaying molecule
Subject: Re: [Jmol-users] Jmol usually not displaying molecule
2010/1/14 Angel Herráez <angel.herr...@uah.es>
How about using jmolAppletInline() ?
That's what it is designed for, right?
yes! Of course. I forgot that! Definitely that is the way to go here.
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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